Protein Analysis

Information Retrieval

• AMSDB: Antimicrobial Sequences Database
  Search for gene-encoded antimicrobial peptides and proteins
• BIOBASE Knowledge Library
  This database is used for: Use Proteome BioKnowledge Library for detailed literature-based curation, comprehensive references, disease information, BioKnowledge transfer and integrated resources.
• Biozon
  Search for a wide range of protein data and information
• CSD: Cold Shock Domain
  Search for cold shock domain containing proteins
• ELM: Eukaryotic Linear Motif Resource
  Predict functional sites in eukaryotic proteins
• EMBL-EBI LGIC
  Search for classification and sequence data for ligand-gated ion channel subunits
• EMBL-EBI Integr8
  Search for information about deciphered genomes and their corresponding proteomes
• GeneCards
  Find concise information about the functions of all human genes
• GPCRDB
  Search for information about G-protein coupled receptors (GPCRs)
• HPRD: Human Protein Reference Database
  Find information pertaining to domain architecture, post-translational modifications, interaction networks and disease association for each protein in the human proteome
• HUGE: Human Unidentified Gene-Encoded Large Proteins
  Search the primary structure of proteins encoded by long cDNAs (>4Kb)
• InBase
  Search for curated information about inteins
• KinBase
  Search comprehensive information about protein kinases from human, mouse, yeast, fruit fly, worm, and other model organisms
• MITOPRED
  Predicts nuclear-encoded mitochondrial proteins from all eukaryotic species including plants
• NCBI Entrez Protein
  Retrieve protein information from a variety of sources, including SwissProt, PIR, PRF, PDB, and translations from annotated coding regions in GenBank and RefSeq
• NCBI RefSeq
  Find non-redundant set of sequences, including genomic DNA, transcript (RNA), and protein products, for major research organisms
• NHGRI Histone Sequence Database
  Search for histone sequences, alignments, and post translational modifications
• O-GLYCBASE
  Search for information about glycoproteins with O-linked and C-linked glycosylation sites
• PIR: Protein Infromation Resource
  Search for integrated and annotated information of proteins
• PROLYSIS
  Search for information about proteases and protease inhibitors
• REFOLD
  Find protein renaturation information, designed to assist in the development of in vitro refolding methods
• SDAP: Structural Database of Allergenic Proteins
  Perform structural studies of allergenic proteins related to allergens and their epitopes
• SPD: Secreted Protein Database
  Search for information of secreted proteins from Human, Mouse and Rat proteomes
• Swiss-Prot
  Retrieve comprehensive protein information
• UniProt
  Search for comprehensive protein sequence and function information in this centralized and authoritative resource