Nucleic Acid Analysis

Polymerase Chain Reaction

• CODEHOP: COnsenus-Degenerate Hybrid Oligonucleotide Primer
  PCR primers based on protein multiple sequence alignments
• DePIE
  Design primers for protein interaction experiments
• Primer3
  Predicts optimal primers for submitted DNA sequences based on user defined conditions
• SNPBox
  Automatically design PCR primers for large-scale amplification and sequencing projects
• SNPCutter
  Design PCR–RFLP assays on a batch of SNPs from the human genome.